Vitessce framework for interactive visualization of single-cell data and its applications
May 5 @ 1:00 pm – 2:00 pm
Mark Keller, PhD student in the Bioinformatics and Integrative Genomics program at Harvard Medical School
This is an online event held via Zoom: https://uni-sydney.zoom.us/j/85114748391
We introduce Vitessce to address the need for a scalable, interactive, and extensible framework that supports visualization of spatial and multimodal single-cell data. Its modular architecture, compatibility with multiple file formats, and support for coordinated multiple views enable researchers to integrate previously disconnected data modalities and view them with a single tool. The adoption of Vitessce by multiple data portals, publication-associated websites, and commercial products underscores its utility. This framework also supports multiple projects in which we have applied Vitessce for comparative, spatial, and epigenomic data visualization, which will be highlighted in this presentation.
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Mark Keller
Mark Keller is a PhD student in the Bioinformatics and Integrative Genomics program at Harvard Medical School, advised by Professor Nils Gehlenborg. His research interests include developing visualization tools for single-cell data.